##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index12_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20719679	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.20141938492387	33.0	31.0	34.0	31.0	34.0
2	32.42996172865419	34.0	31.0	34.0	31.0	34.0
3	32.442414189910956	34.0	31.0	34.0	31.0	34.0
4	36.089174692329934	37.0	35.0	37.0	35.0	37.0
5	35.981505746300414	37.0	35.0	37.0	35.0	37.0
6	35.964901097164685	37.0	35.0	37.0	35.0	37.0
7	35.95646134286154	37.0	35.0	37.0	35.0	37.0
8	35.921847872257096	37.0	35.0	37.0	35.0	37.0
9	37.62451870031384	39.0	37.0	39.0	35.0	39.0
10-14	37.866712684110595	39.2	37.2	39.4	35.0	39.4
15-19	38.82751854408555	40.0	38.0	41.0	35.0	41.0
20-24	38.652417781182805	40.0	38.0	41.0	34.0	41.0
25-29	38.32360214653905	40.0	38.0	41.0	33.8	41.0
30-34	38.29212873423377	40.0	38.0	41.0	33.8	41.0
35-39	38.01967574883762	40.0	37.4	41.0	33.0	41.0
40-44	37.929750909751064	40.0	37.0	41.0	33.0	41.0
45-49	37.581164737156406	39.6	36.4	41.0	32.4	41.0
50-54	36.99096678090428	39.0	35.0	40.8	31.0	41.0
55-59	36.31174535088117	38.0	34.8	40.0	30.4	41.0
60-64	35.4957306433174	36.8	34.0	39.8	29.2	41.0
65-69	34.57420903094106	35.4	33.4	39.0	28.4	40.6
70-74	33.50145228601273	35.0	32.6	37.4	26.4	39.6
75-79	32.4556584394961	34.6	31.8	36.0	26.0	38.8
80-84	31.837253714210533	34.4	31.6	35.0	25.0	37.0
85-89	30.62237487366479	34.0	31.0	35.0	20.8	36.0
90	29.596938253724876	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	6.0
11	51.0
12	203.0
13	1166.0
14	4471.0
15	11418.0
16	19916.0
17	27976.0
18	35455.0
19	43322.0
20	51974.0
21	61767.0
22	72083.0
23	85144.0
24	103025.0
25	128468.0
26	163892.0
27	211204.0
28	270307.0
29	345659.0
30	434134.0
31	545527.0
32	687629.0
33	890176.0
34	1213224.0
35	1755641.0
36	2740143.0
37	4057932.0
38	4512365.0
39	2215265.0
40	30136.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.659018482401525	12.638753869849667	10.817946481163037	50.88428116658578
2	21.91793886356436	19.459256098309453	35.34014710993155	23.282657928194634
3	25.488913221097683	21.848118399903782	22.87092382077927	29.792044558219267
4	27.663594595263756	27.757529448212008	19.48536944032772	25.093506516196513
5	29.126355945561695	29.859282535043747	21.65357910553998	19.36078241385458
6	24.042833868227397	32.921137436540405	21.97249291362091	21.06353578161129
7	21.341170391684155	18.69640934109066	37.76819129292495	22.194228974300227
8	21.631030094626468	22.15427661789548	29.19185186218377	27.02284142529428
9	21.576844892239887	21.052671713688227	31.649457503661132	25.721025890410754
10-14	24.592059558451655	26.34552494756314	24.67050382392507	24.39191167006014
15-19	24.938093876840465	25.192888364728045	25.155517129391818	24.713500629039668
20-24	24.71951833539041	25.439509226368894	25.476923899032645	24.36404853920805
25-29	24.623001301962674	25.44848598575409	25.39631577768717	24.53219693459607
30-34	24.672725296707608	25.368450247834662	25.365033150143113	24.593791305314618
35-39	24.674183490116558	25.51229075493074	25.313471770548958	24.500053984403745
40-44	24.632015545507148	25.339767414910757	25.480768149452476	24.547448890129616
45-49	24.55923961866643	25.420792895163867	25.398750520230458	24.621216965939247
50-54	24.616944346985456	25.48329276966022	25.430017621393652	24.469745261960664
55-59	24.635405401956454	25.41418627058865	25.388920821689464	24.561487505765424
60-64	24.52818521709402	25.4452381140378	25.504323976630296	24.52225269223789
65-69	24.571659159789625	25.551157479936453	25.467429304369162	24.409754055904756
70-74	24.62528557081898	25.47716589414792	25.3881916970126	24.5093568380205
75-79	24.601463322474558	25.45331030066909	25.46636009731853	24.478866279537822
80-84	24.51399921212554	25.592268084888314	25.467715154318594	24.42601754866755
85-89	24.635380072226237	25.55415677707306	25.38248763124504	24.42797551945566
90	24.346382405881105	25.693522266932916	25.58498619022251	24.375109136963474
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.5432996489873
2	45.20059679175899
3	55.28095777931695
4	52.75710111146027
5	48.48713835941627
6	45.10636964983868
7	43.53539936598438
8	48.65387151992075
9	47.297870782650634
10-14	48.98397122851179
15-19	49.651594505880134
20-24	49.08356687459846
25-29	49.15519823655874
30-34	49.26651660202223
35-39	49.174237474520304
40-44	49.17946443563677
45-49	49.18045658460567
50-54	49.08668960894612
55-59	49.19689290772188
60-64	49.050437909331905
65-69	48.98141321569438
70-74	49.13464240883948
75-79	49.08032960201238
80-84	48.94001676079309
85-89	49.0633555916819
90	48.721491542844575
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	1.0
1	1.0
2	1.5
3	1.0
4	0.5
5	4.0
6	7.5
7	9.0
8	17.0
9	30.5
10	37.0
11	62.0
12	91.0
13	149.0
14	304.5
15	545.0
16	985.0
17	1698.0
18	2877.5
19	5197.5
20	6750.0
21	9176.5
22	15340.5
23	24965.0
24	38526.0
25	56857.5
26	81546.0
27	112819.0
28	148005.5
29	186028.0
30	206106.0
31	226039.5
32	268110.0
33	315702.0
34	367562.0
35	417646.5
36	467212.5
37	525006.0
38	575281.0
39	614937.5
40	636226.0
41	650030.5
42	676723.5
43	702141.5
44	718573.0
45	723062.0
46	721441.5
47	717758.5
48	718588.5
49	719134.5
50	717375.0
51	710473.0
52	701493.5
53	689716.5
54	683527.5
55	682964.0
56	672426.0
57	657223.0
58	634324.0
59	605938.0
60	591712.0
61	575073.0
62	538247.0
63	493412.5
64	442201.5
65	389728.5
66	335601.5
67	280093.0
68	230014.5
69	183142.5
70	159058.0
71	138041.0
72	100095.5
73	69670.0
74	44585.0
75	25587.5
76	13955.5
77	6994.5
78	2964.5
79	1146.5
80	620.0
81	439.0
82	188.5
83	94.0
84	48.0
85	27.5
86	19.0
87	8.5
88	7.5
89	6.0
90	4.0
91	3.0
92	1.5
93	0.5
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.17559152340149672
2	0.05283865642899197
3	0.0
4	0.0
5	2.4131647985473133E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	9.652659194189254E-7
25-29	9.218289530450737E-4
30-34	0.0016486741903675244
35-39	0.003532873265073267
40-44	0.003079198282946372
45-49	0.002393859480158935
50-54	0.01304267310318852
55-59	0.00229057602678111
60-64	8.687393274770327E-6
65-69	5.308962556804089E-5
70-74	0.005251046601638954
75-79	0.0028098890914284914
80-84	6.486586978495178E-4
85-89	8.320592225391137E-4
90	0.0014527252087254826
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0719679E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.66883431404991
#Duplication Level	Relative count
1	100.0
2	31.537688442211056
3	16.31737635546152
4	10.120074054482942
5	7.03200211584237
6	5.250462840518382
7	4.00634752710923
8	3.1557788944723617
9	2.726262893414441
10++	31.438243850833114
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5242320	2.864812	5.1257067	2
CCAGG	4364265	2.615263	5.442411	1
CCTGG	4376020	2.6081166	6.077155	1
GAAGA	4426960	2.5512486	5.030303	2
CTTCT	4535470	2.53561	5.446323	1
AAGAA	4475910	2.5118356	5.145885	2
CTGGA	4194955	2.451865	8.602863	1
TCCAG	4073790	2.3643355	5.2906175	2
CTCCT	4047190	2.3197906	7.16601	1
CTGGG	3775200	2.26593	8.161437	1
CAGGA	3807440	2.237478	5.390373	1
CTTCA	3914960	2.2006145	5.6033707	1
CTCCA	3766165	2.1704564	7.3254504	1
CCCAG	3642515	2.1674387	6.845082	1
CAGAA	3649675	2.0885391	5.06731	1
CTCTG	3517800	2.0306034	6.2052174	1
CTGGC	3176505	1.8932035	5.2218695	1
TGGAA	3254505	1.8654157	5.1354947	2
CTGAA	3237740	1.8427817	5.5007586	1
CTCAG	2985725	1.7328472	5.9546046	1
CTTTG	3028200	1.7049179	5.0218854	1
CTGGT	2893525	1.6820542	5.038591	1
CTTGG	2822575	1.6408094	5.331441	1
>>END_MODULE
